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I downloaded the source code uploaded to Git today, built it, and tested it.
OS: Windows 11
I created EPUB2 and EPUB3 files interchangeably and ran about 10 tests, and the duplicate spine reference issue did not occur a single time.
The issue that intermittently appears in version 2.7.6 hasn't occurred for me yet, and if it only happens about 1 in 10 times, I can resolve it by manually editing the opf file.
Thank you to everyone for your hard work!
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