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No worries. But that list of all the javascript files is generated by a concurrent multi-thread process. So the order they are presented may vary. But you control the order with the up and down keys. So you must look carefully at the order presented to you as it is not always the same as the last time you used it.
This is expected behaviour. You determine the actual order of insertion by creating the order the way you want in that Link Javascripts dialog.
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