The books I just converted were ones that would not work with kindle for the PC. In that case, you need to download from the kindle straight into calibre. Any books that could be downloaded with kindle for the PC, worked normally for that setup.
Until recently, I had just been doing things via kindle for the PC since it was the next easiest after download and transfer was disabled. This caused problems for most recently published books. Over the last month or so, that has been a bigger issue, so I was looking for other options.
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