I’ve had that happen before. As far as I understand, it’s caused by a database corruption, and the reformat is as designed.
That doesn’t help you out now, of course. I didn’t find that so helpful either. That’s why I started using Calibre to make backups of my DB. Actually, since the Clara SD has a removable microSD card, I would open up the case once a month and stick the card into my Mac and run dd on it to clone it to my hard drive just in case that catastrophic failure ever happened again.
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