Whatever changes you make to chains are not registred until you press OK to chains dialog, so the chain caller will have problems dealing with uncomitted changes.
The chain caller was retrofitted into the plugin several months later. I considered using uuid for chains, while caching the new names for display purposes, but it comes with some disadvantages; like if someone deletes a chain and creates another one with the same name expecting it to work in the caller chain automatically.
The issue is low priority for me, maybe when I have some free time I will look into it.
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