calibre has the world's best epub-to-pdf conversion. If you already have an epub you can hit 'C' while in calibre's main screen. On the top left it will say 'epub.' On the top right you can change the output to 'pdf.' There are hundreds of options to alter the output to your liking. The pdf output can vary by font size, page size, margins, table of contents, page numbering options, headers, footers. The final pdf can be uploaded without further alteration to Amazon. To actually evaluate the final pdf output you will have to have your own pdf viewer because although calibre has a built in epub viewer it does not have a built in pdf viewer. But calibre will let you assign a key press to pop your pdf into view using your own pdf viewer, so it is seamless.
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