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VERY late to the party here but this thread at least addresses the same issue.
Quoth's suggestion to convert to PDF solves the initial problem, however, my book has extensive endnotes and they all vanished.
First - the problem is very much Libre/Open Office and here I was looking a Calibre. When I convert to HTML or VIEW in HTML from either L/OO I see the same numbering issue.
Maybe I'm not doing it properly but none of the suggestions about the autonumbering settings seem to make any difference.
At this point I only see a brute force solution - editing out the <Li> tags in html either in a raw file or in Calibre itself.
That said, if anyone can point me to an updated solution, please do.
Andy
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