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It works exactly the same as it used to work, you should not need to change anything in your workflow other than possibly re-doing some settings. Try with tomorrow's preview. EPUBs are converted to KEPUB on the fly when sending to the device by default (can be disabled via a setting in the kobo driver).
Since the Kobo hardware is finally available in my country I got one and now I am taking over maintenance of Kobo support in core calibre, needed as davidfor who used to maintain it is no longer with us. Which means the out of the box experience of using Kobo with calibre will be improved without needing to install plugins.
All the functionality of the 5 blacklisted plugins has already been built into core calibre.
Of course there are likely to be some bugs/teething troubles but hopefully those will be rapidly sorted out.
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