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Unfortunately I don't think there is a wireless notes / highlight tool. That info is stored in the database on the Kobo.
Existing tools require a USB connection with corresponding dismount of the shared file system on the Kobo and mounting of that, same partition on the host which then allows the opening of that database on the host.
I suppose you could enable ftp on the Kobo and transfer the database to the host and extract the data from it.
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