FWIW: in our almost 3 years using our two Libra 2s we haven't had a single database corruption. From the beginning I have connected from the home screen, used "eject" from calibre, waited for Windows to tell me it was safe, and waited for the import to finish. I don't use anything fancy such as NickelMenu.
I've used every release of calibre, and often versions of calibre that were never released. I've used test versions of the Kobo driver (I don't use Extended) with complex collection definition templates. Kobo Utilities handles both my and my wife's kobo, doing backups and syncing reading location, percent read, and date read.
My Libra 2 has been incredibly reliable. I wouldn't hesitate for a moment to get another Kobo.
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