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Hmmm... with calibre, I use Kobo Utilities, DeDRM (regular and Obok), Count Pages, Find Duplicates, Quality Check, Modify Epub, Kobo Metadata & Kindle Unpack.
I use epubcheck and Diaps Editing Toolbag with the calibre editor though I use Sigil with epubcheck, TagMechanic and CSSValidator as my goto ePub editor.
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