That is where you needed the exclusion in the Kobo eReader.conf file in the .kobo/Kobo directory. In the root it does nothing since the software does not look for the file there. If you had added the exclusion later, it would have removed all the extraneous images from your Kobo and you would need to re-add the files.
This is where the script file comes in handy since it does the work for you.
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