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I don't use KOReader. Have tried it, but it has a couple of flaws that made me dislike using it. So I use the stock reader, heavily patched. I sideload everything from Calibre.
The only Kobo plugins I use are Kobo Utilities (mostly for saving my reading progress, just in case) and the extended driver (for sending kepubs to my Sage). Metadata and collections sync automatically every time I connect my Kobo to Calibre. As I usually send a lot of books in one go, I don't connect very often, and as I'm used to finding my place manually when switching between my Kobos, I don't need to sync anything via wifi (which is almost always off). I don't highlight or annotate, so no need to sync that either. I'm perfectly content to use mu Kobos offline.
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