If I'm interpreting correctly, you want to put each source page header at the top of each destination page--basically you want to preserve page headers/footers. I don't recall anybody ever asking for that before, surprisingly (because it's a very reasonable ask). Presently there is no way to do that with k2pdfopt. I'll add it to my feature request list, but I haven't had time to do a major update in quite a while.
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