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Well, I appreciate all the help. It looks like the root problem is somehow resolved; re-downloading the errant books with Obok seems to work.
So, I still need a reliable way to search for books that failed to decode completely, so I know to re-download them. But I've already added metadata and covers to them (just part of my normal process).
Maybe learning how to write a plug-in is the way to go...? Any tips?
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