If the footnote styling in the DOCX is a match to what's you have in
Preferences->Conversion->Common options->Structure Detection->Detect chapters at (XPath expression) that could trigger a ToC entry
Quote:
An XPath expression to detect chapter titles. The default is to consider <hi > or <h2> tags that contain the words "chapter", "bode, "section", "prologue", "epilogue" or "part" as chapter titles as well as any tags that have class="chapter". The expression used must evaluate to a list of elements. To disable chapter detection, use the expression "/". See the XPath Tutorial in the calibre User Manual for further help on using this feature.
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