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In my playing with the issue of the database not being properly closed when connecting to the computer, attempting to detect the presence of a .sqlite-wal file and triggering a database close took slightly longer than triggering a reboot on my Kobo Sage, plugging in the USB cable and waiting for the USB connect popup.
Given that this issue is likely to resolved in the next firmware release, I'm not certain that spending more time and effort on solving it is worthwhile.
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