Create a folder in the root of your Kobo, call it something short (ebooks for example), then drag and drop your epubs into that folder, safely eject and let them be imported.
Ebooks synced from Kobo do not have an extension and the file name looks like a GUID (.i.e. 226d66e3-50ea-42ac-83b9-39a5c4808523 )
I would recommend updating calibre, you won't loose any file types and will gain capability and lose bugs.
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