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I had a similar problem, but was able to fix it by using the calibre prs500 command directly from a command window. You can use the --help option with this command to see what options are available
I had to first use it to get a list of what files/folders were there using the 'ls' option. I found that I was missing some of the folders from the path, but was then able to create them using the 'mkdir' option to the command.
Since doing that everything has performed fine.
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