One major problem with Calibre is that it needs to be used as a client in windows cases because it renames UTF-8 book titles to ASCII so they're often unidentifiable in the filesystem, which makes the DB and using the Calibre client pretty important. The mobile epub clients do a pretty good job of using the epub tags for presentation, but opening Epubs from Windows explorer is pretty bad. As far as I can tell, Calibre tries to rename all my Japanese files into chinese ASCII romanization once imported into the Calibre library structure, so I can really only find what i'm looking for from the Calibre UI.
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