I removed all references to KOReader from the files:
/mnt/ext1/system/config/desktop/view.json
/mnt/ext1/system/config/desktop/apps.json
/ebrmain/config/desktop/view.json
/ebrmain/config/desktop/apps_db.json
/ebrmain/config/desktop/apps/apps.json
Added the entry back into /mnt/ext1/system/config/desktop/view.json. The entries I added:
U_koreader
U_KOReader
koreader
KOReader
After reboot, I saw an 2 errors that it couldn't find koreader and KOReader.
Removing both those entries, and having U_KOReader and U_koreader remaining, the icon disappeared again.
So it seems the change can be made in /mnt/ext1/system/config/desktop/view.json. Just need to figure out exactly what we need
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