Thank you for the suggestions! How would I go about fixing it with Kindle Unpack? I installed the plugin, unpacked the book, and noticed some oddities. Books.app said the epub was corrupted and could not be opened. Calibre's epub reader opened it up, but it retained the formatting issue where some pages were cut off at the margins. I put it on my Kobo and the poor device froze outright when I tried to move past page 2 of the book! I had to connect to my computer and delete the book to get it working again.
Or, in the convert screen, when I set the page layout to "tablet", it replicated the bug. Similarly when I set the margins to 0 to try preserving the original layout.
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