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No.
But you can copy all reading status* with Kobo Utilities on Calibre, send the ebooks and then eject. Then reconnect and update the database reading status and other things with Kobo Utilities.
You need to separately install any addons.
The config file and other sertings are not compatible.
[* This is Kobo My Books, KOReader has its own settings which can be copied once the ebooks are installed and a fresh KOReader install is done]
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