Oh! Okay, so here's something reproducible. If you split a file, Sigil automatically takes you to the new file (i.e. below/after the split). If you double-click the original file (above the split) it won't refresh.
(I realize this is getting further from OP's issue so if anyone has an issue with it, I'd be happy to make a new thread for this so things don't get too off-topic).
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