I use Calibre as a personal document management system also. I store my
- scanned invoices, letters
- e-mail
- bookmarks
- passwords
- dates (I miss just an alarm - this is done by other programs)
- notes (as a Zettelkasten)
- physical Books
- E-Books
- Videos and
- Audios (Podcasts etc.)
- Photos (as cbz-files)
I use some default fields for other values, e. g. if I store bookmarks I use to set the author field to "Bookmark".
You can use it very well for a personal document management system.
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