Quote:
Originally Posted by DNSB
I do not recommend the 'Do not treat replacements as new books' since that will cause issues when the ebook navigation and the database's copy of the navigation do not match.
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AFAIK, the only way to avoid this issue is by using KoboUtilities "update ToC for selected book" on the book after sending the replacement file to the device (but it's been a while since I used this feature)