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I am thinking that btrfs could be the reason that apsw cannot connect even though the plugin use of the python os.path.isdir() etc. and shutil seem to work fine. Obviously, Calibre itself uses apsw and it seems to work properly for you, yes? You can copy books among different libraries, etc. yes?
How long have you been using Calibre with btrfs?
DaltonST
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