Well, I've now found several AZW3 books with fonts in them (not even red-shielded fonts). Calibre won't convert any of them to EPUB3 correctly. Every one of them opens with that same problem once converted. If I convert an AZW3 without fonts, it converts just fine.
So, it looks like a Calibre issue to me. I'm going to see if I can load up the previous version and see what happens with that.
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