I'm having the same issue, for the first time since I began using Calibre years ago. I usually process my books (import, then find metadata, primarily comments and covers, put in my own tags) in batches about once a month or so. Usually there are 10-15 books, sometimes more and I've never had it time out like this before. This time it stopped working after 5 books. And although I do now see that line about too many requests, the error message which pops up tells you to try searching with fewer parameters, nothing about too many requests. So of course I kept trying over and over, which has probably upped my number of requests even higher!
I'll try again later.
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