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Everything you need you have in the update file. After unzipping in the imx60_wario directory you have u-boot.bin - that's the bootloader and uImage - that's the kernel. Using fastboot flash the kernel and boot the reader normally. Then using the tools built into the kernel, initialize the partitions, share the FAT partition over USB, record the update file there and run the update from the options.
You will be missing the diag partition, but it is not really needed for the reader to work.
If you had the reader registered to your account then Amazon employees should give you the correct MAC address.
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