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In my own plugins I use Sigil's Clips tool to specify a clip I made, then select the text I want and apply the clip. That makes it a single click to mark text the way my plugin needs. Simple and works well.
To be more specific, my clip inserts xhtml comments both immediately before and after the selected text with a unique comment identifier. The plugin itself finds and removes them when running.
Setting id attributes or setting a specific class attribute for the text also works. Clips make these tasks quite easy.
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