The epub does indeed have only one entry in the TOC, which may be from some conversion settings?? Try converting it with bog-standard defaults.
But its dead easy to fix the epub: Use the TOC editor, which you can get to from the Editor or (I think) the main gui window (You might have to add it to the menu bar...). Each chapter is a file in the epub, so erase the one entry it has, and rebuild the TOC "From files". You might want to fiddle the default chapter names, can't tell from the scrambled file, but that will make a complete TOC.
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