riothamus,
I assume you're asking for fanfiction.net.
FFF has the ability (in windows, at least; I don't test mac & linux very often) to drag and drop selected text from a browser and parse out all the story URLs.
So if you are on an author's page, select all (usually with ctrl-a), the drag the selected text onto the FFF button in Calibre, FFF should give you the list of story URLs. You can copy/paste that to a file and use FFDL's "Read links from file" feature.
That should work, but it's not something I do regularly, so YMMV.
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