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Sigil 1.8 introduced the concepts of Search Controls in Saved Searches so the user can now determine all of the FindAndReplace settings from within Saved Search for any group.
What Search Controls have you set for search group?
FWIW, Sigil master has completely changed how Saved Searches are being done so you do not need to use Replace based on seeing the code highlighted in CV and can skip to the next location easily and not be forced back to something you decided not to do a replace on.
So you should be able to do what you want completely inside Saved Searches when Sigil 1.9 is eventually released. These changes mean that Find and Replace no longer uses wrap to mean both wrapping in a single file and wrapping across a set of files. It only controls wrapping inside a single file (current file mode). That also means we have added a Restart search button to FindAndReplace so the user decides when and if to loop back through the targeted set of files.
So hopefully, things will be much better once Sigil 1.9 is eventually released.
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