Hi Gary,
Are you actually running the Mobi2Mobi.exe form within a command window or just double clicking on the exe? This would explain the window popping up and disappearing. Under Windows XP go to the Start button and select Run. Type in CMD and hit enter. This should launch a command window. Change to the directory containing the Mobi2Mobi.exe file and try the conversion using manual settings for the program.
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