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Adding any svg or adding an link to an external resource, adding an inline script even moving code via copy and paste may require updating manifest properties but there is no way for Sigil to determine that since they were introduced by text editing.
So if you are editing epub3s, there really is a good reason to use the Update Manifest Properties tool last, right before running epubcheck and doing the final save. Having link javascript do it is no guarantee is has been done properly until after all text editing is done.
Sorry but this is not a good idea as it may lead the user into thinking their manifest properties are correct when they are actually not.
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