Ah I see, Doitsu pointed out that clearing the Find and Replace only holds until you close the F&R window and then it reloads the history next time it is opened.
I will add a context sensitive menu to allow the user to clear both Find and Replace histories for the next release.
The only way now to completely clear these histories is to manually edit the sigil.ini file.
I can lead you through how to do that if you want.
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