No, the driver is not capable of doing that. If you are only sending a few books as kepubs, you can convert the books to kepub. Then just use built-in KoboTouch driver. Its default configuration is to send kepubs if they exist in preference to epubs. You will also need to install the Kepub Output and the Kepub Metadata Writer plugins. I also recommend installing the the Kepub Input and the Kepub Metadata Reader plugins in case you need to convert the other way.
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