Just to be clear.
Which TOC is missing? All, Inline, NCX.
Kobo's really use the NCX when you tap the TOC icon. You don't need the inline one. (I've been removing those that don't offer More than the NCX one as it is just 2 taps away and you don't lose your place).
FWIW You can add the TOC tool to your Calibre menubar and touchup the TOC (NCX) without editing the whole book. Broken links will show Red. The tool is very close to the one in the Editor
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