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I am also not sure what the deal is with it. I always eject using either calibre or windows before removing.
Anyways I signed out and back in again. I made a copy of the KoboReader.sqlite then tried to have the metadata sync only for it to corrupt after reconnecting.
I try one more time without closing calibre and I was not getting a corrupt database when reconnecting the device so I decided to try rebooting the Kobo.
Once the Kobo came back online half of the books disappeared from the My Books. There are books with incorrect titles, unknown authors and incomplete titles. None of the read status came over.
Launching calibre reports again corrupt database. The metadata sync takes 2-3 seconds complete when it does run and that seems awfully fast.
I gave it one last try for tonight and it appears to have sync everything with the exception of read status.
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