Hmm ... I have not seen that. Typically having it open full screen and moving your mouse to the top left corner pops up the menu to escape full screen. Once you have done that immediately have sigil do a save-file as to someplace and close. athis should force Sigil to overwrite the sigil settings file that saves if it was fullscreen or not.
If that does not fix it, Close and exit completely out of Sigil (all Sigil main windows) and I can tell you which line to edit manually in the Sigil.ini file to tell it you do not want fullscreen.
You should not need to do that but ...
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