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If the document consistently gives chapter titles a particular tag (and doesn't use that tag elsewhere) a simple Search and Replace to insert "sigil_split_marker" will do the job.
But if the code were that organised, I suspect the TOC would have been sorted out already. You may have no practical alternative to finding the chapter titles you want to list in a TOC and applying the h1 tag manually.
How many chapters? Some jobs are really too small to be worth automating.
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