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Originally Posted by BewilderedUser
Hey! Just wanted to say that the problem seems resolved now; I had Library Maintenance rebuild the database and that woke up Calibre and it now sees the rest of the eBooks!
Thanks again for all your time and thoughts!!
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Glad you got it resolved. A bit of advice re cloud storage: if your library is in a folder that's being constantly synced with a cloud provider (e.g. OneDrive), move it out of there. That can easily cause database corruption. If you want to have a backup in the cloud, use FreeFileSync or the like to mirror your library folder to the cloud (one way sync only).