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Originally Posted by Atcold
No worries. Yeah, in fact I was a little dubious about the log utility upon inspection. Hehe 
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This time it gave me the hint. There was an error reading the My Clippings.txt file so that it didn't find any. This was because I reverted an earlier change when I realised it broke pre-5.0 support and I missed something. The attached beta should fix this. And, in case it doesn't, logs the error a bit better. Can you send me a debug log even if it does work?
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Could you also explain to me what your plug-in does? I cannot manually locate any bookmark file in /Volumes/Kindle/documents/<author name>.
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The "bookmark" files are a pseudo file. For Kindles, the plugin uses a function in calibre to get a list of books. It uses this as the extension but also returns the known formats. Then it looks for files that match the file name but with the book extension.
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Also, I see Atomic Habits in the resolve_path section (line 118) but not after List of storage devices (line 136). So, it does not pop up in the resolved_path_map (line 232).
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That's interesting. Calibre seems to think there are two books: "Atomic Habits: Tiny Changes, Remarkable Results _ An Easy & Proay to Build Good Habits & Break Bad Ones" and "Atomic Habits: Tiny Changes, Remarkable Results" (though the punctuation in titles might not be correct and there might be some shortening). But, when the plugin checks, it cannot find them. In the library, the first one has epub and azw3, the second has mobi. When the plugin searches for these books, it doesn't find them with these names and extensions and hence drops them. The plugin also does a scan of the device using the extensions and doesn't find them that way as well.
Is the book actually on the device? If so, what is the full path for it? Does calibre show it as on the device in the library?