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I use Reading List and a clear-on-sync add/overwrite list called "Send to Device."
I also have a tristate boolean column, #onkobo. Undefined = not on device. Yes = current version on device. No = Need to re-upload (mostly updated fanfics). I use custom column icons to replace the checks.
For multiple devices, a fixed-value or tag-like column might work better, e.g. Kobo (Up-to-date), Android (Need to Sync)
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