Please note, the user's guide is not up to date but does cover many of the main features. We are always looking for help to update it. There are a few useful new features not covered by the user's guide (yet) such as custom icons, multiple language spellchecking, and checkpointing (saving a full version so you can recover to it or see differences since any previous checkpoint) to name just a few.
Plus a plethora of plugins that do a bunch of useful things such as converting epub2 to epub3, importing mobi/kindle, importing Office files, cleaning up badly formatted epubs, epubcheck validation, plugins to add accessibility features and much more. Check out our Sigil Plugin Index here on Mobileread for many others.
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