Okay, it looks I have figured it out. Basically, the settings set in the preferences were interfering with it. I set Disable comic processing in the Preferences, and forgot to uncheck to use the saved settings (I guess that's what it does?).
Anyway, I basically got lost in all the settings, which means it works as it should.
Note to others: disabling comic processing messes with cbr to pdf conversion but does not interfere with cbr to epub.
Thank you for your help. I may be back with more silly questions.
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