It must be in your code somewhere. Unfortunately, I can't help with that unless I can see the code...
I tend to split omnibuses into their individual books...no need to slow down the renderer by transferring huge files. But the concept, and coding, is the same for books that have parts and chapters.
I use the <h1>-<h6> tags to create a proper hierarchy. Then Sigil, and I'm pretty sure Calibre does it too, will auto create the ToC and it works perfectly in Marvin.
You can also look at your ncx file to make sure it makes sense...or use Sigil's ToC editor which will create a proper ncx.
Also...if nothing else works...try selecting Publisher's mode in Marvin...select the Aa and scroll down???
Cheers,
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