Thanks, i was able to solve it last night, but still not sure about the real cause behind it. I had to factory reset my kobo again, and then load some of the books one by one using calibre. Before, i had restored them by just manually copying them into the internal memory.
Also, i switched my books from kepub to epub. Not sure if it might have been a book that was causing issues, or just a random configuration somewhere, but at least now it's solved.
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