Only upload epub2 to KDP, unless you are doing fixed layout.
Forget about making mobi or azw. Anything is best directly converted from epub2 in Calibre and the best starting point, unless you want to use Sigil or edit CSS and/or HTML is a properly styled docx made in Word or LO Writer, but only edit native odt in Writer and use an extra Save As docx for export.
Also InDesign and then conversion is a bad solution. Either have an Indesign plugin for the type of thing you want, or don't use it. It's really for paper/PDFs and other fixed layout documents.
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